Basic Information
Locus ID:
gene:TRIDC6BG033010
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 283599094 | 283606340 | - | gene:TRIDC6BG033010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 79,952.04 Da | 43.05 | 89.76 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 644 | 684 | 3.99896E-18 | - |
| Pfam | PF04564 | U-box domain | 640 | 709 | 2.4E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 358 | 607 | 3.9E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 338 | 613 | 1.07E-68 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 638 | 709 | 1.15E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 430 | 639 | 6.1E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 327 | 429 | 1.6E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 640 | 714 | 6.4E-27 | IPR013083 |
| SMART | SM00220 | serkin_6 | 357 | 628 | 1.6E-30 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 643 | 705 | 2.4E-21 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 639 | 712 | 26.20273 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 357 | 658 | 34.604992 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 475 | 487 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 363 | 384 | - | IPR017441 |
| Coils | Coil | Coil | 258 | 278 | - | - |
| Coils | Coil | Coil | 220 | 247 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57035.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_037455311.1 | U-box domain-containing protein 34-like [Triticum dicoccoides] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6PMJ6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG033010.