Basic Information
Locus ID:
gene:TRIDC6BG032080
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 269660934 | 269662205 | + | gene:TRIDC6BG032080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 44,668.10 Da | 50.37 | 98.96 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 54 | 5.94093E-22 | - |
| Pfam | PF04564 | U-box domain | 12 | 76 | 1.7E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 78 | 1.26E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 173 | 402 | 2.53E-7 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 83 | 2.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 85 | 406 | 1.9E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 75 | 3.1E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 82 | 36.15414 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_037455599.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum dicoccoides] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PKY4 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG032080.