Basic Information
Locus ID:
gene:TRIDC6BG029530
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 232806431 | 232808454 | - | gene:TRIDC6BG029530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 71,147.68 Da | 38.29 | 91.47 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 196 | 239 | 3.66416E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 197 | 240 | 1.8E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 410 | 644 | 3.9E-32 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 365 | 645 | 1.19E-52 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 195 | 240 | 3.79E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 352 | 445 | 2.2E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 446 | 664 | 1.5E-49 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 185 | 248 | 4.8E-10 | IPR036779 |
| SMART | SM00257 | LysM_2 | 196 | 240 | 1.0E-4 | IPR018392 |
| SMART | SM00257 | LysM_2 | 128 | 176 | 4.1 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 195 | 239 | 11.276593 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 329 | 656 | 28.527372 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 268 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_037454515.1 | protein LYK5-like [Triticum dicoccoides] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PLY0 | Protein LYK5 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG029530.