Basic Information
Locus ID:
gene:TRIDC6BG029480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 232244285 | 232246623 | - | gene:TRIDC6BG029480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 70,798.53 Da | 31.95 | 90.43 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 197 | 240 | 5.1348E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 198 | 241 | 4.1E-7 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 406 | 641 | 1.7E-32 | IPR001245 |
| SUPERFAMILY | SSF54106 | LysM domain | 196 | 241 | 5.23E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 364 | 644 | 6.93E-54 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 188 | 249 | 1.8E-9 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 442 | 653 | 9.6E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 348 | 441 | 9.7E-11 | - |
| SMART | SM00257 | LysM_2 | 197 | 241 | 7.1E-6 | IPR018392 |
| SMART | SM00257 | LysM_2 | 129 | 177 | 2.9 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 302 | 652 | 29.149267 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 196 | 240 | 11.809201 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_037451244.1 | protein LYK5-like [Triticum dicoccoides] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PLT5 | Protein LYK5 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG029480.