Basic Information
Locus ID:
gene:TRIDC6BG029130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 227848541 | 227857014 | + | gene:TRIDC6BG029130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 142,578.61 Da | 33.24 | 108.58 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1024 | 1294 | 1.37923E-95 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 611 | 633 | 0.71 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 468 | 490 | 0.6 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 790 | 808 | 0.34 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 516 | 574 | 8.1E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1022 | 1292 | 4.5E-44 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 206 | 228 | 1.9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 44 | 82 | 7.4E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 658 | 906 | 8.62E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 999 | 1293 | 2.73E-75 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 360 | 668 | 1.49E-54 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 90 | 361 | 7.69E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 174 | 241 | 3.4E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 242 | 342 | 5.5E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 173 | 1.8E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 812 | 920 | 3.1E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 343 | 440 | 1.3E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1095 | 1307 | 2.3E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 441 | 807 | 1.3E-95 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 980 | 1094 | 2.2E-34 | - |
| SMART | SM00220 | serkin_6 | 1018 | 1299 | 3.9E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 180 | 202 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 252 | 276 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 132 | 156 | 4.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 843 | 867 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 204 | 227 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 633 | 657 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 467 | 489 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 585 | 609 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 324 | 348 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 766 | 790 | 200.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1018 | 1299 | 37.21978 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1142 | 1154 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1024 | 1046 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_044419239.1 | leucine-rich repeat receptor protein kinase MSP1-like [Triticum aestivum] | 0 |
| Q8RZV7 | Leucine-rich repeat receptor protein kinase MSP1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PJW5 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG029130.