Basic Information
Locus ID:
gene:TRIDC6BG026520
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 200117115 | 200124667 | - | gene:TRIDC6BG026520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 44,325.69 Da | 41.68 | 73.92 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 60 | 133 | 1.89811E-26 | - |
| Pfam | PF00627 | UBA/TS-N domain | 191 | 227 | 1.6E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 62 | 135 | 9.8E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 286 | 340 | 4.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 367 | 403 | 8.4E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 351 | 409 | 2.89E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 60 | 146 | 3.97E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 282 | 349 | 1.19E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 164 | 237 | 1.85E-12 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 57 | 139 | 1.1E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 359 | 407 | 1.9E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 182 | 232 | 1.0E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 276 | 341 | 4.6E-27 | IPR036353 |
| SMART | SM00727 | CBM | 284 | 327 | 7.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 189 | 229 | 6.6E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 60 | 134 | 1.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 368 | 405 | 1.2E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 166 | 411 | 3.5E-79 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 366 | 406 | 14.787924 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 60 | 138 | 17.974802 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 188 | 230 | 12.426409 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 312 | 334 | 3.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 393 | 3.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 378 | 3.5E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 409 | 3.5E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 175 | - | - |
| Coils | Coil | Coil | 313 | 333 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037451835.1 | ubiquitin receptor RAD23b-like isoform X2 [Triticum dicoccoides] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6PL49 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG026520.