halophFGD

Basic Information

Locus ID: gene:TRIDC6BG024370

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
6B	176694271	176695060	-	gene:TRIDC6BG024370

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.90	4,579.14 Da	45.55	100.00	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	1	37	2.4E-16	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	1	39	8.06E-17	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	40	1.5E-22	-
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	39	17.953026	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.
RefSeq	XP_019708906.1	ubiquitin [Elaeis guineensis]
Swiss-Prot	P69326	Ubiquitin OS=Triticum aestivum OX=4565 PE=1 SV=2
TrEMBL	A0A453NEW6	Ubiquitin-like domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC6BG024370.