Basic Information
Locus ID:
gene:TRIDC6BG021800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 155682825 | 155688003 | + | gene:TRIDC6BG021800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 66,939.28 Da | 40.51 | 83.58 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 49 | 156 | 1.82934E-7 | IPR000014 |
| Pfam | PF13418 | Galactose oxidase, central domain | 524 | 569 | 4.1E-4 | - |
| Pfam | PF13415 | Galactose oxidase, central domain | 416 | 467 | 4.7E-5 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 302 | 344 | 1.9E-9 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 353 | 405 | 1.6E-8 | - |
| Pfam | PF12937 | F-box-like | 214 | 252 | 3.6E-7 | IPR001810 |
| Pfam | PF13426 | PAS domain | 56 | 156 | 1.4E-14 | IPR000014 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 285 | 605 | 2.35E-40 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 201 | 258 | 5.89E-15 | IPR036047 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 57 | 157 | 7.33E-19 | IPR035965 |
| Gene3D | G3DSA:2.120.10.80 | - | 281 | 483 | 1.1E-38 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 204 | 250 | 1.4E-7 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 46 | 168 | 1.3E-41 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 485 | 616 | 5.0E-14 | IPR015915 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 61 | 156 | 1.1E-7 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 62 | 117 | 10.811609 | IPR000014 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57360.1 | Galactose oxidase/kelch repeat superfamily protein. Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. | 0 |
| RefSeq | XP_037451747.1 | putative adagio-like protein 2 [Triticum dicoccoides] | 0 |
| Q67UX0 | Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150800 PE=3 SV=1 | 0 | |
| TrEMBL | E1U291 | ZTL OS=Triticum aestivum OX=4565 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG021800.