Basic Information
Locus ID:
gene:TRIDC6BG021440
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 151392058 | 151403728 | + | gene:TRIDC6BG021440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 101,049.69 Da | 48.11 | 86.94 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 740 | 867 | 4.93591E-61 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 229 | 541 | 1.07196E-97 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 232 | 620 | 1.2E-82 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 672 | 718 | 1.5E-9 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 744 | 856 | 2.0E-15 | IPR001650 |
| Pfam | PF08797 | HIRAN domain | 5 | 103 | 7.7E-12 | IPR014905 |
| SUPERFAMILY | SSF57850 | RING/U-box | 659 | 720 | 1.72E-15 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 553 | 901 | 8.46E-61 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 216 | 541 | 5.14E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 909 | 2.5E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 288 | 554 | 2.0E-52 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 639 | 737 | 7.8E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 674 | 713 | 6.4E-9 | IPR001841 |
| SMART | SM00910 | HIRAN_2 | 2 | 108 | 1.8E-6 | IPR014905 |
| SMART | SM00487 | ultradead3 | 225 | 522 | 1.8E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 773 | 856 | 1.2E-18 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 744 | 904 | 14.636852 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 674 | 714 | 12.725326 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 287 | 503 | 18.821026 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 689 | 698 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 198 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22750.1 | DNA/RNA helicase protein. DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer | 0 |
| RefSeq | XP_037453184.1 | DNA repair protein RAD5A-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FNI6 | DNA repair protein RAD5A OS=Arabidopsis thaliana OX=3702 GN=RAD5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PK64 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG021440.