Basic Information
Locus ID:
gene:TRIDC6BG019280
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Mono-functional DNA-alkylating methyl methanesulfonate N-term
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 134984905 | 134990272 | - | gene:TRIDC6BG019280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 135,728.88 Da | 40.30 | 90.91 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term | 86 | 600 | 1.6E-158 | IPR018846 |
| Pfam | PF03178 | CPSF A subunit region | 874 | 1193 | 4.5E-91 | IPR004871 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 53 | 638 | 2.22E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 538 | 1070 | 1.46E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 1138 | 6.0E-234 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 412 | 6.0E-234 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 451 | 778 | 6.0E-234 | IPR015943 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55200.1 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein. | 0 |
| RefSeq | XP_037451796.1 | spliceosome-associated protein 130 A-like [Triticum dicoccoides] | 0 |
| P0DKL4 | Spliceosome-associated protein 130 A OS=Arabidopsis thaliana OX=3702 GN=SAP130A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PI68 | Splicing factor 3B subunit 3 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG019280.