Basic Information
Locus ID:
gene:TRIDC6BG017010
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
domain in protein kinases, N-glycanases and other nuclear proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 117350988 | 117356608 | - | gene:TRIDC6BG017010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 46,316.19 Da | 53.39 | 74.16 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10461 | PUB_UBA_plant | 306 | 411 | 3.24598E-59 | - |
| CDD | cd14290 | UBA_PUB_plant | 111 | 159 | 1.52146E-20 | - |
| Pfam | PF00627 | UBA/TS-N domain | 113 | 149 | 3.3E-6 | IPR015940 |
| Pfam | PF09409 | PUB domain | 319 | 389 | 3.0E-20 | IPR018997 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 304 | 407 | 1.96E-24 | IPR036339 |
| SUPERFAMILY | SSF46934 | UBA-like | 102 | 165 | 7.02E-17 | IPR009060 |
| Gene3D | G3DSA:1.20.58.2190 | - | 305 | 400 | 6.2E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 90 | 167 | 4.1E-18 | - |
| SMART | SM00580 | PGNneu | 322 | 384 | 5.6E-20 | - |
| SMART | SM00165 | uba_6 | 113 | 151 | 7.9E-5 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 111 | 152 | 11.221553 | IPR015940 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 8 | 30 | - | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 45 | 67 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 207 | - | - |
| Coils | Coil | Coil | 223 | 260 | - | - |
| Coils | Coil | Coil | 306 | 326 | - | - |
| Coils | Coil | Coil | 177 | 212 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04850.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein. | 0 |
| RefSeq | XP_037452423.1 | UBX domain-containing protein 4-like [Triticum dicoccoides] | 0 |
| Q9BZV1 | UBX domain-containing protein 6 OS=Homo sapiens OX=9606 GN=UBXN6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PHM9 | UBA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG017010.