Basic Information
Locus ID:
gene:TRIDC6BG016130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 100742137 | 100742899 | - | gene:TRIDC6BG016130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 15,988.25 Da | 29.82 | 104.27 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 28 | 103 | 1.24995E-50 | - |
| Pfam | PF00240 | Ubiquitin family | 106 | 143 | 1.7E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 30 | 101 | 5.1E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 1 | 25 | 8.5E-5 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 103 | 6.13E-39 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 103 | 143 | 8.06E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 27 | 4.8E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 28 | 103 | 3.6E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 104 | 143 | 9.9E-21 | - |
| SMART | SM00213 | ubq_7 | 104 | 143 | 26.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 28 | 99 | 6.9E-34 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 28 | 103 | 29.058479 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 27 | 10.288086 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 104 | 143 | 11.964792 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 54 | 79 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 80 | 101 | 3.1E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 59 | 79 | 3.1E-37 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 38 | 58 | 3.1E-37 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_037452920.1 | polyubiquitin 11-like [Triticum dicoccoides] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | D7M2I1 | Predicted protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_663560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG016130.