Basic Information
Locus ID:
gene:TRIDC6BG015580
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
CPK18
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 94850908 | 94860838 | + | gene:TRIDC6BG015580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 52,399.84 Da | 43.10 | 93.93 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 1 | 235 | 1.63742E-115 | - |
| CDD | cd00051 | EFh | 388 | 444 | 3.0578E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 2 | 236 | 8.1E-62 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 309 | 371 | 1.9E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 390 | 443 | 2.9E-11 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 261 | 3.51E-70 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 297 | 452 | 4.67E-32 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 62 | 243 | 2.9E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 61 | 1.3E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 244 | 447 | 2.2E-37 | - |
| SMART | SM00054 | efh_1 | 346 | 374 | 0.81 | IPR002048 |
| SMART | SM00220 | serkin_6 | 1 | 236 | 1.4E-68 | IPR000719 |
| SMART | SM00054 | efh_1 | 418 | 446 | 0.038 | IPR002048 |
| SMART | SM00054 | efh_1 | 388 | 416 | 0.0048 | IPR002048 |
| SMART | SM00054 | efh_1 | 309 | 337 | 0.0049 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 384 | 419 | 11.500702 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 236 | 44.018234 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 305 | 340 | 12.504936 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 342 | 377 | 9.296966 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 422 | 449 | 9.799083 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 397 | 409 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 98 | 110 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 318 | 330 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 355 | 367 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 427 | 439 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66210.1 | calcium-dependent protein kinase 28. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_037452841.1 | calcium-dependent protein kinase 4-like [Triticum dicoccoides] | 0 |
| Q6Z2M9 | Calcium-dependent protein kinase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453N4P0 | Calcium-dependent protein kinase 28 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG015580.