Basic Information
Locus ID:
gene:TRIDC6BG015100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Vacuolar protein sorting-associated protein 8 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 90592096 | 90606120 | - | gene:TRIDC6BG015100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 198,434.05 Da | 47.59 | 91.83 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12816 | Golgi CORVET complex core vacuolar protein 8 | 792 | 977 | 1.9E-55 | IPR025941 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 314 | 363 | 5.6E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 266 | 593 | 1.04E-14 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1593 | 1648 | 3.25E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 250 | 426 | 7.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 352 | 391 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 349 | 0.0018 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 358 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1594 | 1642 | 9.45016 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1737 | 1783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1745 | 1764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1766 | 1783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 88 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00800.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037450268.1 | vacuolar protein sorting-associated protein 8 homolog [Triticum dicoccoides] | 0 |
| Q0P5W1 | Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus OX=10090 GN=Vps8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QCG2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG015100.