Basic Information
Locus ID:
gene:TRIDC6BG005790
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 28134910 | 28140406 | - | gene:TRIDC6BG005790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 97,756.92 Da | 30.51 | 112.41 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 458 | 518 | 8.2E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 162 | 184 | 0.084 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 380 | 430 | 2.6E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 626 | 684 | 9.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 530 | 589 | 4.7E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 72 | 108 | 3.3E-12 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 793 | 883 | 1.2E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 772 | 882 | 1.85E-23 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 498 | 709 | 1.1E-43 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 129 | 540 | 1.56E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 769 | 870 | 6.2E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 422 | 719 | 1.7E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 224 | 326 | 9.8E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 327 | 421 | 5.4E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 69 | 223 | 6.9E-43 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 160 | 183 | 3.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 304 | 328 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 354 | 378 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 330 | 353 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 208 | 232 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 505 | 529 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 599 | 623 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 647 | 671 | 63.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 578 | 600 | 7.98148 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 789 | 888 | 13.107179 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 795 | 818 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 599 | 612 | 7.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 555 | 568 | 7.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47090.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_044420011.1 | receptor kinase-like protein Xa21 isoform X1 [Triticum aestivum] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RPF1 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF091400190CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG005790.