Basic Information
Locus ID:
gene:TRIDC6BG001430
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6B | 9183735 | 9186511 | - | gene:TRIDC6BG001430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 41,373.40 Da | 38.15 | 103.40 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 214 | 266 | 3.5E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 130 | 193 | 7.4E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 54 | 121 | 3.0E-22 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 273 | 342 | 1.6E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 191 | 267 | 5.63E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 124 | 192 | 1.02E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 266 | 342 | 4.35E-23 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 51 | 127 | 4.35E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 269 | 361 | 9.9E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 198 | 6.1E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 199 | 268 | 1.5E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 45 | 127 | 1.2E-33 | - |
| SMART | SM00213 | ubq_7 | 128 | 192 | 3.4E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 197 | 265 | 1.0E-6 | IPR000626 |
| SMART | SM00213 | ubq_7 | 52 | 123 | 8.0E-24 | IPR000626 |
| SMART | SM00213 | ubq_7 | 271 | 341 | 2.3E-20 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 197 | 269 | 12.726931 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 52 | 127 | 23.919485 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 271 | 341 | 21.328213 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 128 | 192 | 11.812365 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 78 | 103 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 104 | 125 | 9.3E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 62 | 82 | 9.3E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 83 | 103 | 9.3E-23 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044435606.1 | polyubiquitin 11-like [Triticum aestivum] | 0 |
| P69309 | Polyubiquitin OS=Avena fatua OX=4499 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6PEF0 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6BG001430.