Basic Information
Locus ID:
gene:TRIDC6AG061840
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 620844436 | 620847026 | - | gene:TRIDC6AG061840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 56,931.79 Da | 42.26 | 101.51 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 48 | 94 | 6.26002E-19 | - |
| Pfam | PF04564 | U-box domain | 46 | 120 | 5.2E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 120 | 8.24E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 124 | 504 | 2.2E-36 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 326 | 2.2E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 327 | 505 | 3.8E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 118 | 1.9E-22 | IPR013083 |
| SMART | SM00185 | arm_5 | 466 | 506 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 283 | 323 | 59.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 155 | 196 | 26.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 198 | 238 | 100.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 47 | 115 | 2.0E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 363 | 410 | 6.6 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 43 | 122 | 24.964331 | IPR003613 |
| Coils | Coil | Coil | 273 | 293 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_037449230.1 | U-box domain-containing protein 24-like [Triticum dicoccoides] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7UWH5 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG061840.