Basic Information
Locus ID:
gene:TRIDC6AG058010
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 606750506 | 606756988 | - | gene:TRIDC6AG058010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 41,767.93 Da | 35.77 | 81.63 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 104 | 172 | 6.4E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 81 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 369 | 1.56E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 367 | 9.9E-132 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 38 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 172 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 82 | 8.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 366 | 15.0 | IPR001680 |
| PIRSF | PIRSF038093 | ARPC1 | 1 | 372 | 9.7E-147 | IPR017383 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 81 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 172 | 9.639578 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 324 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31300.1 | actin-related protein C1B. putative ARP2/3 protein complex subunit p41 | 0 |
| RefSeq | XP_037448997.1 | actin-related protein 2/3 complex subunit 1B-like [Triticum dicoccoides] | 0 |
| Q9SJW6 | Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=ARPC1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A341ZB41 | Actin-related protein 2/3 complex subunit OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG058010.