Basic Information
Locus ID:
gene:TRIDC6AG057060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 602514890 | 602525506 | + | gene:TRIDC6AG057060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 88,940.33 Da | 44.55 | 66.70 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 527 | 812 | 1.6807E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 778 | 812 | 0.047 | IPR001680 |
| Pfam | PF08513 | LisH | 19 | 44 | 1.5E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 696 | 729 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 605 | 9.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 649 | 7.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 525 | 812 | 2.56E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 519 | 664 | 2.4E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 665 | 812 | 5.5E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 691 | 729 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 605 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 688 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 649 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 773 | 812 | 7.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 732 | 771 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 616 | 650 | 8.887423 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 17 | 49 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 606 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 698 | 738 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 780 | 812 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 606 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 780 | 812 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 616 | 658 | 11.410742 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 592 | 606 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 441 | - | - |
| Coils | Coil | Coil | 374 | 410 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_037448934.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Triticum dicoccoides] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NX33 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG057060.