Basic Information
Locus ID:
gene:TRIDC6AG055990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 598230405 | 598236406 | - | gene:TRIDC6AG055990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 79,094.55 Da | 44.95 | 76.07 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 96 | 140 | 3.81732E-11 | - |
| Pfam | PF17123 | RING-like zinc finger | 96 | 125 | 4.8E-9 | IPR001841 |
| Pfam | PF00092 | von Willebrand factor type A domain | 279 | 470 | 2.4E-24 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 636 | 708 | 4.5E-22 | IPR032838 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 146 | 5.18E-15 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 275 | 473 | 6.4E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 279 | 474 | 2.2E-41 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 146 | 4.1E-12 | IPR013083 |
| SMART | SM00327 | VWA_4 | 277 | 469 | 3.5E-24 | IPR002035 |
| SMART | SM00184 | ring_2 | 96 | 139 | 2.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 140 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 279 | 480 | 16.751139 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 735 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037448883.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NX67 | Zinc finger (C3HC4-type RING finger) family protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG055990.