Basic Information
Locus ID:
gene:TRIDC6AG054130
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 592306619 | 592308607 | - | gene:TRIDC6AG054130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.47 | 22,029.76 Da | 66.61 | 60.70 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 189 | 2.07319E-15 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 189 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 194 | 1.36E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 194 | 2.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 188 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 189 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 90 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037448773.1 | probable E3 ubiquitin-protein ligase HIP1 isoform X2 [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NVR2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG054130.