Basic Information
Locus ID:
gene:TRIDC6AG048850
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 559260847 | 559267019 | + | gene:TRIDC6AG048850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 76,749.83 Da | 62.01 | 71.11 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16504 | RING-HC_COP1 | 57 | 101 | 8.9117E-21 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 499 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 549 | 584 | 1.2E-4 | IPR001680 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 60 | 97 | 6.5E-10 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 380 | 678 | 6.77E-54 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 119 | 3.16E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 172 | 1.3E-18 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 349 | 683 | 2.6E-150 | IPR015943 |
| SMART | SM00320 | WD40_4 | 501 | 542 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 457 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 500 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 680 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 407 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 584 | 1.4E-7 | IPR001680 |
| SMART | SM00184 | ring_2 | 60 | 97 | 2.5E-5 | IPR001841 |
| SMART | SM00320 | WD40_4 | 587 | 626 | 0.79 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 499 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 553 | 593 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 60 | 97 | 11.604098 | IPR001841 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 553 | 586 | 10.258324 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 571 | 585 | - | IPR019775 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 75 | 84 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 304 | - | - |
| Coils | Coil | Coil | 149 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32950.1 | Transducin/WD40 repeat-like superfamily protein. Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. | 0 |
| RefSeq | XP_037448440.1 | E3 ubiquitin-protein ligase COP1-like [Triticum dicoccoides] | 0 |
| P43254 | E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453PPJ2 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG048850.