Basic Information
Locus ID:
gene:TRIDC6AG044050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 523048124 | 523052183 | + | gene:TRIDC6AG044050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 106,721.95 Da | 44.18 | 100.03 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 176 | 250 | 2.8E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 261 | 572 | 3.34E-29 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 516 | 951 | 9.6E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 254 | 1.77E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 253 | 1.2E-19 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 808 | 964 | 2.5E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 259 | 784 | 3.0E-38 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 177 | 245 | 5.8E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 826 | 867 | 54.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 491 | 536 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 734 | 776 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 284 | 324 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 410 | 450 | 31.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 325 | 365 | 63.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 173 | 252 | 13.279161 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.1 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_037448117.1 | putative U-box domain-containing protein 42 isoform X1 [Triticum dicoccoides] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6NTX6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG044050.