Basic Information
Locus ID:
gene:TRIDC6AG043200
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 516027271 | 516035272 | + | gene:TRIDC6AG043200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 82,155.20 Da | 50.50 | 58.50 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15489 | PHD_SF | 325 | 371 | 5.73938E-10 | - |
| Pfam | PF00628 | PHD-finger | 325 | 373 | 6.3E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 320 | 383 | 2.67E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 238 | 380 | 7.4E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 324 | 372 | 9.3E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 322 | 374 | 9.2052 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 128 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20280.2 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_037448055.1 | PHD finger protein At3g20280-like [Triticum dicoccoides] | 0 |
| Q5PNS0 | PHD finger protein At3g20280 OS=Arabidopsis thaliana OX=3702 GN=At3g20280 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NTP1 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG043200.