Basic Information
Locus ID:
gene:TRIDC6AG043080
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 513597055 | 513601043 | - | gene:TRIDC6AG043080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 42,199.24 Da | 49.73 | 61.54 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16521 | RING-HC_MKRN | 221 | 279 | 1.24914E-16 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 23 | 42 | 0.0096 | - |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 157 | 177 | 5.4E-5 | IPR000571 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 221 | 278 | 2.0E-7 | IPR018957 |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 313 | 335 | 0.0028 | - |
| Pfam | PF18044 | CCCH-type zinc finger | 51 | 70 | 5.1E-7 | IPR041367 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 20 | 43 | 4.19E-7 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 285 | 1.12E-14 | - |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 48 | 70 | 2.22E-5 | IPR036855 |
| Gene3D | G3DSA:4.10.1000.10 | - | 48 | 130 | 8.0E-6 | - |
| Gene3D | G3DSA:1.20.120.1350 | - | 13 | 47 | 1.5E-7 | - |
| Gene3D | G3DSA:6.10.250.3220 | - | 135 | 184 | 2.1E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 308 | 1.4E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 221 | 278 | 1.1E-6 | IPR001841 |
| SMART | SM00356 | c3hfinal6 | 153 | 178 | 0.017 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 308 | 336 | 0.058 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 47 | 72 | 1.6E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 19 | 44 | 7.5E-5 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 308 | 337 | 12.276813 | IPR000571 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 221 | 279 | 12.371254 | IPR001841 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 18 | 45 | 13.901127 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 46 | 73 | 14.032575 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 152 | 179 | 12.135977 | IPR000571 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 245 | 254 | - | IPR017907 |
| Coils | Coil | Coil | 200 | 220 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08505.1 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037448047.1 | E3 ubiquitin-protein ligase makorin-like [Triticum dicoccoides] | 0 |
| Q5ZA07 | E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica OX=39947 GN=MKRN PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NTN1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG043080.