Basic Information
Locus ID:
gene:TRIDC6AG041870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 501566562 | 501571779 | - | gene:TRIDC6AG041870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 99,129.55 Da | 52.95 | 89.11 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 388 | 430 | 2.18545E-23 | - |
| Pfam | PF04564 | U-box domain | 385 | 454 | 8.7E-18 | IPR003613 |
| Pfam | PF05804 | Kinesin-associated protein (KAP) | 686 | 802 | 5.2E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 372 | 459 | 6.18E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 567 | 830 | 1.8E-19 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 559 | 857 | 7.7E-22 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 384 | 459 | 2.2E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 387 | 450 | 1.2E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 383 | 457 | 36.720268 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 357 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36550.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_044403999.1 | U-box domain-containing protein 5-like isoform X1 [Triticum aestivum] | 0 |
| O23225 | U-box domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUB5 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8R7QQV0 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG041870.