Basic Information
Locus ID:
gene:TRIDC6AG040260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 487384176 | 487385427 | + | gene:TRIDC6AG040260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 38,178.57 Da | 71.05 | 80.82 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 142 | 184 | 1.44374E-15 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 196 | 4.18E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 189 | 4.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 8.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 108 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60220.1 | TOXICOS EN LEVADURA 4. Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4). | 0 |
| RefSeq | XP_037447829.1 | E3 ubiquitin-protein ligase ATL4-like [Triticum dicoccoides] | 0 |
| Q9LY41 | E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NSG7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG040260.