Basic Information
Locus ID:
gene:TRIDC6AG040110
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 486165890 | 486170288 | + | gene:TRIDC6AG040110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 60,656.25 Da | 42.92 | 83.58 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 91 | 349 | 3.70395E-137 | - |
| CDD | cd00051 | EFh | 469 | 529 | 5.13639E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 468 | 528 | 3.6E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 398 | 458 | 2.7E-12 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 94 | 350 | 6.2E-71 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 83 | 374 | 2.56E-85 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 374 | 531 | 2.0E-46 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 178 | 357 | 3.1E-56 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 358 | 532 | 1.2E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 94 | 177 | 2.1E-26 | - |
| SMART | SM00054 | efh_1 | 397 | 425 | 2.0E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 92 | 350 | 1.1E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 469 | 497 | 9.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 503 | 531 | 3.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 433 | 461 | 0.096 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 501 | 534 | 10.468573 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 92 | 350 | 46.830902 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 429 | 464 | 10.524363 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 465 | 500 | 14.876045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 393 | 428 | 15.266581 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 478 | 490 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 442 | 454 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 406 | 418 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 98 | 125 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 212 | 224 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 512 | 524 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 68 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 0 |
| RefSeq | XP_037447814.1 | calcium-dependent protein kinase 5-like [Triticum dicoccoides] | 0 |
| Q0DYK7 | Calcium-dependent protein kinase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6NSY3 | Calcium-dependent protein kinase 26 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG040110.