Basic Information
Locus ID:
gene:TRIDC6AG039630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 481124444 | 481132919 | + | gene:TRIDC6AG039630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 46,589.39 Da | 30.58 | 74.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 110 | 130 | 4.3E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 176 | 4.3E-6 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 107 | 131 | 6.67E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 425 | 5.95E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 279 | 1.5E-20 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 105 | 137 | 4.5E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 431 | 3.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 341 | 384 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 424 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 253 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 176 | 9.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 214 | 190.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 28 | 53 | 0.054 | IPR000571 |
| SMART | SM00320 | WD40_4 | 300 | 337 | 0.14 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 108 | 132 | 0.0023 | IPR000571 |
| SMART | SM00320 | WD40_4 | 260 | 297 | 0.0034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 176 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 306 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 185 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.840281 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 300 | 8.861059 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 106 | 133 | 14.342415 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 8.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 284 | 298 | 8.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 8.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 84 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_037447773.1 | zinc finger CCCH domain-containing protein 17-like [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6NS31 | Zinc finger CCCH domain-containing protein 48-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG039630.