Basic Information
Locus ID:
gene:TRIDC6AG039540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 479813923 | 479816096 | - | gene:TRIDC6AG039540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 42,392.44 Da | 33.02 | 101.50 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 22 | 63 | 1.70672E-25 | - |
| Pfam | PF04564 | U-box domain | 18 | 89 | 2.5E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 92 | 3.49E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 387 | 4.03E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 402 | 9.1E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 91 | 5.1E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 21 | 84 | 6.9E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 17 | 91 | 40.285084 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_037447768.1 | U-box domain-containing protein 26-like [Triticum dicoccoides] | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NS88 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG039540.