Basic Information
Locus ID:
gene:TRIDC6AG038900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
CT11-RanBPM
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 468532442 | 468534956 | - | gene:TRIDC6AG038900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 43,945.21 Da | 46.56 | 91.76 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16652 | dRing_Rmd5p_like | 327 | 375 | 2.36361E-29 | IPR037683 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 152 | 292 | 2.3E-25 | IPR024964 |
| Pfam | PF13445 | RING-type zinc-finger | 329 | 370 | 4.9E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 382 | 1.53E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 385 | 2.3E-6 | IPR013083 |
| SMART | SM00757 | toby_final6 | 204 | 298 | 4.3E-15 | IPR013144 |
| SMART | SM00668 | ctlh | 151 | 208 | 1.9E-5 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 168 | 208 | 10.686928 | IPR006595 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 329 | 372 | 13.774238 | IPR044063 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37880.1 | LisH/CRA/RING-U-box domains-containing protein. | 0 |
| RefSeq | XP_037447726.1 | protein RMD5 homolog [Triticum dicoccoides] | 0 |
| Q9T075 | Protein RMD5 homolog OS=Arabidopsis thaliana OX=3702 GN=RMD5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NRX7 | LisH/CRA/RING-U-box domains-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG038900.