Basic Information
Locus ID:
gene:TRIDC6AG037900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 458363565 | 458369156 | - | gene:TRIDC6AG037900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 114,904.71 Da | 47.29 | 81.34 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 938 | 979 | 8.82604E-24 | - |
| CDD | cd01989 | STK_N | 1 | 201 | 6.88592E-26 | - |
| Pfam | PF04564 | U-box domain | 935 | 1005 | 2.8E-16 | IPR003613 |
| Pfam | PF00582 | Universal stress protein family | 5 | 116 | 4.1E-5 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 662 | 849 | 6.9E-28 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 928 | 1005 | 3.0E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 641 | 900 | 2.02E-48 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 635 | 732 | 8.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 733 | 921 | 7.8E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 932 | 1008 | 3.7E-28 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 126 | 1.4E-6 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 937 | 1000 | 2.4E-31 | IPR003613 |
| SMART | SM00220 | serkin_6 | 658 | 952 | 1.7E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 658 | 913 | 24.061028 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 933 | 1007 | 36.81757 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 780 | 792 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 664 | 685 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 62 | - | - |
| Coils | Coil | Coil | 384 | 418 | - | - |
| Coils | Coil | Coil | 497 | 517 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_037446252.1 | U-box domain-containing protein 33-like [Triticum dicoccoides] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NQ51 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG037900.