halophFGD

Basic Information

Locus ID: gene:TRIDC6AG036860

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: RING-H2 zinc finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
6A	450252795	450253394	-	gene:TRIDC6AG036860

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.81	20,885.65 Da	65.42	74.87	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	145	188	9.2E-14	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	142	192	1.89E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	142	190	2.5E-19	IPR013083
SMART	SM00184	ring_2	146	187	5.9E-9	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	146	188	12.577796	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	13	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	13	38	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	99	122	-	-

KEGG Pathway

KO Term:

K19040 (E3 ubiquitin-protein ligase ATL10/75/76/77/78 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G17450.1	RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a.
RefSeq	XP_037449724.1	RING-H2 finger protein ATL79-like [Triticum dicoccoides]
Swiss-Prot	O22755	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1
TrEMBL	A0A3B6NPX0	RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC6AG036860.