Basic Information
Locus ID:
gene:TRIDC6AG034840
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 421907525 | 421913800 | - | gene:TRIDC6AG034840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 71,043.90 Da | 52.66 | 82.78 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 203 | 374 | 1.6395E-53 | - |
| CDD | cd16448 | RING-H2 | 20 | 64 | 5.54329E-11 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 549 | 621 | 3.0E-22 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 204 | 385 | 3.8E-24 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 20 | 49 | 1.4E-9 | IPR001841 |
| SUPERFAMILY | SSF53300 | vWA-like | 200 | 387 | 5.56E-33 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 73 | 1.41E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 75 | 2.3E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 204 | 388 | 1.7E-43 | IPR036465 |
| SMART | SM00327 | VWA_4 | 202 | 386 | 1.5E-22 | IPR002035 |
| SMART | SM00184 | ring_2 | 20 | 63 | 2.4E-6 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 204 | 387 | 17.068129 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 64 | 12.090947 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037447445.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NR06 | Zinc finger (C3HC4-type RING finger) family protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG034840.