Basic Information
Locus ID:
gene:TRIDC6AG032260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ig-like domain from next to BRCA1 gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 375424861 | 375430356 | - | gene:TRIDC6AG032260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 98,394.69 Da | 51.14 | 77.60 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14319 | UBA_NBR1 | 856 | 894 | 3.51551E-14 | - |
| CDD | cd14947 | NBR1_like | 541 | 654 | 9.33078E-48 | IPR032350 |
| CDD | cd06398 | PB1_Joka2 | 52 | 138 | 1.26264E-40 | - |
| Pfam | PF00564 | PB1 domain | 52 | 134 | 2.3E-9 | IPR000270 |
| Pfam | PF00569 | Zinc finger, ZZ type | 468 | 500 | 3.8E-9 | IPR000433 |
| Pfam | PF16158 | Ig-like domain from next to BRCA1 gene | 552 | 653 | 1.4E-30 | IPR032350 |
| SUPERFAMILY | SSF57850 | RING/U-box | 461 | 520 | 3.18E-14 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 857 | 894 | 4.03E-7 | IPR009060 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 52 | 139 | 7.57E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 51 | 136 | 2.2E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 856 | 897 | 1.3E-17 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 537 | 657 | 2.7E-30 | IPR013783 |
| Gene3D | G3DSA:1.10.8.10 | - | 811 | 855 | 6.5E-17 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 459 | 513 | 2.3E-11 | IPR043145 |
| SMART | SM00291 | zz_5 | 465 | 508 | 6.5E-7 | IPR000433 |
| SMART | SM00666 | PB1_new | 51 | 136 | 4.7E-9 | IPR000270 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 465 | 512 | 11.915071 | IPR000433 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 812 | 851 | 9.076911 | IPR015940 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 51 | 136 | 14.477583 | IPR000270 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 853 | 896 | 8.691358 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24690.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. | 0 |
| RefSeq | XP_037447251.1 | protein JOKA2-like isoform X1 [Triticum dicoccoides] | 0 |
| M1BJF6 | Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NRF7 | Protein NBR1 homolog OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG032260.