Basic Information
Locus ID:
gene:TRIDC6AG028070
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 239644193 | 239646376 | - | gene:TRIDC6AG028070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 78,365.51 Da | 50.15 | 100.76 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 300 | 342 | 1.7237E-21 | - |
| Pfam | PF04564 | U-box domain | 296 | 363 | 1.7E-16 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 431 | 468 | 7.7E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 363 | 8.39E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 399 | 677 | 1.42E-36 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 355 | 540 | 6.6E-34 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 542 | 661 | 1.8E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 354 | 4.6E-19 | IPR013083 |
| SMART | SM00185 | arm_5 | 471 | 512 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 429 | 469 | 0.0056 | IPR000225 |
| SMART | SM00185 | arm_5 | 594 | 635 | 98.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 514 | 554 | 4.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 555 | 593 | 92.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 299 | 362 | 8.4E-27 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 440 | 482 | 10.9024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 295 | 369 | 35.959538 | IPR003613 |
| Coils | Coil | Coil | 220 | 240 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29340.1 | plant U-box 17. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. | 0 |
| RefSeq | XP_037447005.1 | U-box domain-containing protein 4-like [Triticum dicoccoides] | 0 |
| Q6EUK7 | U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NQR6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG028070.