Basic Information
Locus ID:
gene:TRIDC6AG026870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 214734854 | 214749266 | + | gene:TRIDC6AG026870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 82,576.05 Da | 44.80 | 90.08 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 673 | 713 | 1.00982E-17 | - |
| Pfam | PF00069 | Protein kinase domain | 387 | 634 | 9.7E-41 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 12 | 145 | 1.7E-6 | IPR006016 |
| Pfam | PF04564 | U-box domain | 670 | 738 | 2.8E-17 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 147 | 1.34E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 667 | 738 | 2.21E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 367 | 642 | 6.34E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 668 | 743 | 2.1E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 459 | 667 | 2.7E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 356 | 458 | 6.7E-27 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 10 | 152 | 3.2E-8 | IPR014729 |
| SMART | SM00220 | serkin_6 | 386 | 657 | 3.8E-30 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 672 | 734 | 3.5E-21 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 668 | 741 | 23.832083 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 386 | 687 | 34.294044 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 392 | 413 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 504 | 516 | - | IPR008271 |
| Coils | Coil | Coil | 256 | 276 | - | - |
| Coils | Coil | Coil | 287 | 307 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57035.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_037446912.1 | U-box domain-containing protein 34-like [Triticum dicoccoides] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6QGK1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG026870.