halophFGD

Basic Information

Locus ID: gene:TRIDC6AG025470-100890

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
6A	190984929	190995818	+	gene:TRIDC6AG025470-100890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.87	103,767.73 Da	39.84	87.93	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	19	299	3.35455E-67	-
Pfam	PF00400	WD domain, G-beta repeat	93	129	1.4E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	179	217	3.6E-6	IPR001680
Pfam	PF04053	Coatomer WD associated region	321	765	3.4E-160	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	222	258	1.5E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	134	173	8.7E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	2	299	6.41E-79	IPR036322
SUPERFAMILY	SSF101898	NHL repeat	223	494	1.46E-19	-
Gene3D	G3DSA:2.130.10.10	-	13	302	6.5E-114	IPR015943
Gene3D	G3DSA:1.25.40.470	-	592	800	9.0E-83	-
SMART	SM00320	WD40_4	220	259	3.3E-11	IPR001680
SMART	SM00320	WD40_4	90	129	6.3E-9	IPR001680
SMART	SM00320	WD40_4	133	173	4.0E-9	IPR001680
SMART	SM00320	WD40_4	6	45	1.3	IPR001680
SMART	SM00320	WD40_4	48	87	0.44	IPR001680
SMART	SM00320	WD40_4	176	217	2.2E-7	IPR001680
PIRSF	PIRSF005567	Beta'-COP	4	887	0.0	IPR016453
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	227	258	12.420132	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	140	174	10.864685	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	97	129	10.811958	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	140	182	13.215325	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	183	220	9.731054	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	97	129	13.014815	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	227	268	15.487762	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	183	226	12.981398	IPR001680
PRINTS	PR00320	G protein beta WD-40 repeat signature	204	218	2.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	246	260	2.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	160	174	2.2E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	850	919	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	854	891	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52360.2	Coatomer, beta' subunit.
RefSeq	XP_037446799.1	coatomer subunit beta'-2-like [Triticum dicoccoides]
Swiss-Prot	Q6H8D5	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1
TrEMBL	A0A8R7R6J5	Coatomer subunit beta' OS=Triticum urartu OX=4572 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC6AG025470-100890.