Basic Information
Locus ID:
gene:TRIDC6AG024290
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
methyl-CpG-binding domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 176289502 | 176314152 | - | gene:TRIDC6AG024290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 222,502.66 Da | 52.01 | 74.81 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15519 | PHD1_Lid2p_like | 1169 | 1214 | 3.3724E-23 | - |
| Pfam | PF00628 | PHD-finger | 1169 | 1215 | 6.9E-12 | IPR019787 |
| Pfam | PF15613 | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1537 | 1631 | 1.4E-7 | IPR028941 |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 1282 | 1318 | 5.4E-13 | IPR028942 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1163 | 1221 | 4.43E-17 | IPR011011 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1003 | 1123 | 1.26E-6 | IPR036427 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 27 | 109 | 8.86E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 98 | 1.0E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.920.10 | - | 997 | 1119 | 2.0E-9 | IPR036427 |
| Gene3D | G3DSA:3.30.160.360 | - | 272 | 375 | 5.2E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1231 | 3.9E-21 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1169 | 1215 | 7.6E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 31 | 97 | 3.8E-6 | IPR001965 |
| ProSiteProfiles | PS51542 | FYR domain FYRN motif profile. | 271 | 324 | 16.764772 | IPR003888 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1167 | 1217 | 10.166399 | IPR019787 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 638 | 700 | 8.901474 | IPR018501 |
| ProSiteProfiles | PS51543 | FYR domain FYRC motif profile. | 430 | 572 | 17.011635 | IPR003889 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 32 | 96 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1170 | 1214 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1222 | 1251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1805 | 1849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1222 | 1263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1429 | 1492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1805 | 1847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1429 | 1457 | - | - |
| Coils | Coil | Coil | 1324 | 1344 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01460.1 | methyl-CPG-binding domain 9. Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. | 0 |
| RefSeq | XP_037446735.1 | methyl-CpG-binding domain-containing protein 9-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9SGH2 | Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=MBD9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NPK0 | PHD-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG024290.