Basic Information
Locus ID:
gene:TRIDC6AG023670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 167184785 | 167192949 | + | gene:TRIDC6AG023670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 128,899.67 Da | 33.66 | 106.33 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 896 | 1166 | 8.40755E-96 | - |
| Pfam | PF13516 | Leucine Rich repeat | 662 | 680 | 0.31 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 340 | 362 | 0.54 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 78 | 100 | 1.8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 483 | 505 | 0.63 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 388 | 446 | 2.6E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 894 | 1163 | 2.5E-44 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 150 | 209 | 3.4E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 232 | 532 | 5.81E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2 | 210 | 2.07E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 871 | 1165 | 4.24E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 532 | 779 | 1.87E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 967 | 1179 | 3.8E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 684 | 792 | 1.8E-21 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 852 | 966 | 2.5E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 118 | 214 | 1.3E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 117 | 6.7E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 313 | 683 | 9.2E-97 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 215 | 312 | 2.1E-23 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 4 | 28 | 4.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 638 | 662 | 340.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 890 | 1171 | 3.9E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 76 | 99 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 124 | 148 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 505 | 529 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 196 | 220 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 715 | 739 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 457 | 481 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 361 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 52 | 74 | 410.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 890 | 1171 | 37.036041 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 896 | 918 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1014 | 1026 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_044408422.1 | leucine-rich repeat receptor protein kinase MSP1-like [Triticum aestivum] | 0 |
| Q8RZV7 | Leucine-rich repeat receptor protein kinase MSP1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NM92 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG023670.