Basic Information
Locus ID:
gene:TRIDC6AG020610
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 130676345 | 130683602 | - | gene:TRIDC6AG020610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 46,111.64 Da | 45.40 | 72.53 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 61 | 134 | 1.94715E-26 | - |
| Pfam | PF00627 | UBA/TS-N domain | 383 | 419 | 3.7E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 302 | 356 | 4.3E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 63 | 136 | 1.0E-14 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 207 | 243 | 1.7E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 367 | 425 | 3.9E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 61 | 147 | 4.51E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 201 | 253 | 5.35E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 298 | 365 | 1.31E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 58 | 140 | 1.3E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 198 | 248 | 1.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 292 | 357 | 4.9E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 375 | 423 | 1.3E-23 | - |
| SMART | SM00727 | CBM | 300 | 343 | 7.3E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 61 | 135 | 1.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 384 | 421 | 1.2E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 205 | 245 | 6.6E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 61 | 427 | 1.1E-119 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 382 | 422 | 14.860215 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 204 | 246 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 61 | 139 | 17.974802 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 328 | 350 | 3.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 395 | 409 | 3.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 378 | 394 | 3.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 410 | 425 | 3.8E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| Coils | Coil | Coil | 329 | 349 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037446481.1 | ubiquitin receptor RAD23b-like [Triticum dicoccoides] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8R7QLV6 | Ubiquitin receptor RAD23 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG020610.