Basic Information
Locus ID:
gene:TRIDC6AG020460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ribosomal_L40e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 128654359 | 128655578 | + | gene:TRIDC6AG020460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.12 | 18,509.13 Da | 33.88 | 83.98 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 38 | 107 | 1.77806E-47 | - |
| Pfam | PF01020 | Ribosomal L40e family | 122 | 165 | 5.2E-25 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 40 | 111 | 1.1E-30 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 30 | 113 | 4.86E-32 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 122 | 163 | 1.65E-13 | IPR011332 |
| Gene3D | G3DSA:4.10.1060.50 | - | 122 | 166 | 3.3E-22 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 31 | 120 | 8.7E-44 | - |
| SMART | SM00213 | ubq_7 | 38 | 109 | 9.1E-32 | IPR000626 |
| SMART | SM01377 | Ribosomal_L40e_3 | 121 | 166 | 3.7E-22 | IPR001975 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 38 | 113 | 28.25279 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 64 | 89 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 48 | 68 | 1.2E-35 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 69 | 89 | 1.2E-35 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 90 | 111 | 1.2E-35 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037449357.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| B9DHA6 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453NHP8 | Ubiquitin-like domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG020460.