Basic Information
Locus ID:
gene:TRIDC6AG020320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 126976999 | 126980178 | + | gene:TRIDC6AG020320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 15,724.65 Da | 50.37 | 88.43 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 48 | 110 | 2.17464E-37 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 1 | 43 | 3.5E-18 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 48 | 111 | 2.8E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 48 | 110 | 2.37E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 45 | 7.06E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 45 | 2.6E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 46 | 115 | 2.2E-28 | - |
| SMART | SM00213 | ubq_7 | 46 | 117 | 1.1E-22 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 41 | 0.13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 46 | 121 | 23.353325 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 45 | 20.631401 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 72 | 97 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 22 | 43 | 5.1E-25 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 1 | 21 | 5.1E-25 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_044406288.1 | ubiquitin-NEDD8-like protein RUB2 isoform X1 [Triticum aestivum] | 0 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6NLJ8 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG020320.