Basic Information
Locus ID:
gene:TRIDC6AG016070
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 92483633 | 92488817 | + | gene:TRIDC6AG016070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 62,094.32 Da | 38.14 | 86.66 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 9 | 107 | 6.04216E-7 | IPR000014 |
| Pfam | PF12937 | F-box-like | 165 | 203 | 3.3E-7 | IPR001810 |
| Pfam | PF13418 | Galactose oxidase, central domain | 253 | 295 | 1.7E-9 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 475 | 520 | 3.7E-4 | - |
| Pfam | PF13418 | Galactose oxidase, central domain | 304 | 356 | 1.4E-8 | - |
| Pfam | PF13415 | Galactose oxidase, central domain | 367 | 418 | 4.2E-5 | - |
| Pfam | PF13426 | PAS domain | 8 | 107 | 6.5E-15 | IPR000014 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 8 | 108 | 4.54E-19 | IPR035965 |
| SUPERFAMILY | SSF81383 | F-box domain | 152 | 209 | 5.36E-15 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 239 | 458 | 1.18E-34 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 438 | 568 | 3.9E-11 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 231 | 436 | 8.0E-39 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 155 | 201 | 1.2E-7 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 1 | 119 | 1.5E-41 | - |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 12 | 107 | 3.3E-8 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 1 | 68 | 11.487615 | IPR000014 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57360.1 | Galactose oxidase/kelch repeat superfamily protein. Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1. | 0 |
| RefSeq | XP_037445841.1 | putative adagio-like protein 2 [Triticum dicoccoides] | 0 |
| Q67UX0 | Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150800 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8R7URX7 | PAS domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG016070.