Basic Information
Locus ID:
gene:TRIDC6AG016050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 92470494 | 92474947 | + | gene:TRIDC6AG016050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 69,797.05 Da | 67.15 | 65.10 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 576 | 617 | 1.52294E-14 | - |
| Pfam | PF13639 | Ring finger domain | 575 | 617 | 2.6E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 568 | 622 | 4.48E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 540 | 621 | 1.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 576 | 616 | 6.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 576 | 617 | 11.191014 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 347 | - | - |
| Coils | Coil | Coil | 484 | 504 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24870.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037445840.1 | E3 ubiquitin-protein ligase RLIM-like [Triticum dicoccoides] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | M8A8S2 | E3 ubiquitin-protein ligase Arkadia OS=Triticum urartu OX=4572 GN=TRIUR3_09191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG016050.