Basic Information
Locus ID:
gene:TRIDC6AG015850
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 90158688 | 90159670 | + | gene:TRIDC6AG015850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 16,591.98 Da | 31.23 | 109.32 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 21 | 96 | 3.56198E-50 | - |
| Pfam | PF00240 | Ubiquitin family | 23 | 94 | 1.6E-33 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 99 | 149 | 6.2E-22 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 12 | 96 | 9.76E-35 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 96 | 149 | 7.46E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 15 | 96 | 1.8E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 97 | 147 | 1.9E-33 | - |
| SMART | SM00213 | ubq_7 | 97 | 168 | 2.2E-14 | IPR000626 |
| SMART | SM00213 | ubq_7 | 21 | 92 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 96 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 97 | 172 | 21.763721 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 123 | 148 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 47 | 72 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 73 | 94 | 1.6E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 52 | 72 | 1.6E-38 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 31 | 51 | 1.6E-38 | IPR019956 |
| Coils | Coil | Coil | 143 | 148 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_044407910.1 | polyubiquitin-like isoform X2 [Triticum aestivum] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453NBW0 | Polyubiquitin OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG015850.