Basic Information
Locus ID:
gene:TRIDC6AG015650
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 87627216 | 87637695 | + | gene:TRIDC6AG015650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 113,242.34 Da | 51.68 | 83.99 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 346 | 658 | 6.41192E-98 | - |
| CDD | cd18793 | SF2_C_SNF | 857 | 984 | 7.36276E-59 | - |
| CDD | cd16449 | RING-HC | 791 | 830 | 1.52422E-13 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 789 | 835 | 1.8E-9 | - |
| Pfam | PF08797 | HIRAN domain | 116 | 220 | 2.2E-12 | IPR014905 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 861 | 973 | 2.8E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 349 | 737 | 5.1E-84 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 775 | 837 | 1.2E-15 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 333 | 658 | 1.05E-50 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 670 | 1018 | 1.04E-59 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 756 | 854 | 7.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 674 | 1026 | 2.6E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 404 | 671 | 1.1E-53 | IPR038718 |
| SMART | SM00910 | HIRAN_2 | 115 | 225 | 1.6E-10 | IPR014905 |
| SMART | SM00184 | ring_2 | 791 | 830 | 6.4E-9 | IPR001841 |
| SMART | SM00487 | ultradead3 | 342 | 639 | 7.9E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 890 | 973 | 1.2E-18 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 404 | 620 | 19.198269 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 864 | 1021 | 14.562161 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 791 | 831 | 12.725326 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 806 | 815 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 106 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22750.1 | DNA/RNA helicase protein. DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer | 0 |
| RefSeq | XP_037445816.1 | DNA repair protein RAD5A-like [Triticum dicoccoides] | 0 |
| Q9FNI6 | DNA repair protein RAD5A OS=Arabidopsis thaliana OX=3702 GN=RAD5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NKJ5 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG015650.