Basic Information
Locus ID:
gene:TRIDC6AG014770
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 80112053 | 80113545 | - | gene:TRIDC6AG014770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 11,830.51 Da | 22.29 | 103.87 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 76 | 1.51687E-50 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 6.0E-34 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 79 | 107 | 6.4E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 76 | 4.67E-34 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 76 | 108 | 8.91E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 77 | 110 | 2.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 2.3E-47 | - |
| SMART | SM00213 | ubq_7 | 1 | 72 | 3.0E-35 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 30.452106 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 77 | 152 | 9.787251 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 6.1E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 6.1E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 6.1E-39 | IPR019956 |
| Coils | Coil | Coil | 99 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_043629804.1 | ubiquitin-like [Erigeron canadensis] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | Q9SXU2 | Polyubiquitin (Fragment) OS=Cicer arietinum OX=3827 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG014770.