Basic Information
Locus ID:
gene:TRIDC6AG013870
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Mono-functional DNA-alkylating methyl methanesulfonate N-term
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 74256678 | 74262474 | + | gene:TRIDC6AG013870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 133,263.05 Da | 40.88 | 90.79 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03178 | CPSF A subunit region | 849 | 1169 | 2.0E-91 | IPR004871 |
| Pfam | PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term | 62 | 576 | 6.1E-159 | IPR018846 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 29 | 614 | 2.35E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 538 | 1012 | 9.77E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 1114 | 3.9E-231 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 427 | 754 | 3.9E-231 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 388 | 3.9E-231 | IPR015943 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55200.1 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein. | 0 |
| RefSeq | XP_037445699.1 | spliceosome-associated protein 130 A-like [Triticum dicoccoides] | 0 |
| P0DKL4 | Spliceosome-associated protein 130 A OS=Arabidopsis thaliana OX=3702 GN=SAP130A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NMR0 | Splicing factor 3B subunit 3 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG013870.