Basic Information
Locus ID:
gene:TRIDC6AG012990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6A | 67028888 | 67040630 | + | gene:TRIDC6AG012990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 99,761.76 Da | 47.82 | 83.26 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 502 | 542 | 1.2E-5 | IPR001810 |
| Pfam | PF00400 | WD domain, G-beta repeat | 167 | 202 | 3.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 63 | 379 | 8.99E-40 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 502 | 554 | 1.57E-9 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 38 | 254 | 4.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 381 | 1.9E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 294 | 338 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 155 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 291 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 94 | 0.0069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 245 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 347 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 203 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 203 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 9.873505 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 189 | 203 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 466 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_037445624.1 | protein TOPLESS-RELATED PROTEIN 2-like isoform X1 [Triticum dicoccoides] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QKM4 | F-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC6AG012990.